Caffe install on delta (done)

• git clone git@github.com:BVLC/caffe.git
• Dependency installation script at https://gist.github.com/dineshj1/ad960e8361127c647194
• CMake installation works.
• glog installation works
• gflags installation works
• protobuf installation complicated: 
• 3.0 installation failing with pthread library error. Fixed hackily.
• Installer can't file pthread library, sets HAVE_PTHREAD to false.
• In src/Makefile.am, around line 15, edit the if HAVE_PTHREAD, ... , else, .. endif block, to execute the code for HAVE_PTHREAD = true, without checking the condition. i.e. PTHREAD_DEF = -DHAVE_PTHREAD=1
• protobuf 2.6.1 installation appears to work cleanly. 
• leveldb installation works
• snappy installation works
• hdf5 installation works
• opencv installation ?
• first failed with "Unsupported gpu architecture compute_11. fixed by cmake rerun with -DCUDA_GENERATION=Kepler flag (specific to Tesla C2075 GPU -- figure out which gpu with nvidia-smi)
• failed again, due to possible mismatch between CUDA-7.5 and opencv-2.4.9. Fix by downloading and replacing the following file: http://code.opencv.org/projects/opencv/repository/revisions/feb74b125d7923c0bc11054b66863e1e9f753141/entry/modules/gpu/src/nvidia/core/NCVPixelOperations.hpp
• Works (modified CMakeCache.txt that worked successfully: https://gist.github.com/dineshj1/759e846dc7cb7cf45182)
• opencv-3.0.0 installation?. Also possible to disable opencv in caffe installation
• fails again with "undefined reference to 'parallel_pthreads_set_threads_num(int)'
• Boost installation works following steps at: http://www.boost.org/doc/libs/1_59_0/more/getting_started/unix-variants.html#easy-build-and-install (Section 5.1)
• Main Caffe installation
• Using Makefile.config
• module list output looks like: 1) cuda/7.5            2) intel/14.0.0        3) mkl/10.2.5.035      4) java/1.6.0-x86_64   5) vim/7.2             6) cmake/2.8.1         7) atlas/3.10.2
• cp Makefile.config.example Makefile.config. Small changes, to point to anaconda etc. https://gist.github.com/dineshj1/209aecc7b753b8fa92aff82571cf0ede
• Error when $ make runtest,  with system gflags (libgflags.so.0) getting linked to installed glog. Fixed by: /N/u/dineshj/local/$ ln -s libgflags.so.2.2 libgflags.so.0
• bash_profile at: 
• Works right away!
• Using cmake
• module list output looks like: 1) vim/7.2        2) cmake/2.8.1    3) gcc/4.8.2      4) cuda/7.5       5) atlas/3.10.2
• Modifying various items in CMakeCache.txt: ATLAS_lapack_library, boost libraries, leveldb, protobuf, python, snappy, opencv (modified CMakeCache.txt at https://gist.github.com/dineshj1/8424162f5e67476d455d)
• First attempt produces errors:
• boost version already present is too old. Installation fixed this.
• Second attempt nearly there, but produces errors:
• Using system's original installation of opencv causes errors. Install opencv-2.4.9, then try again. 
• make all -j works. 
• make pycaffe -j works.
• make runtest -j works!
• Error with system gflags (libgflags.so.0) getting linked to installed glog. Fixed by: /N/u/dineshj/local/$ ln -s libgflags.so.2.2 libgflags.so.0
• add ~/local/python/ to PYTHONPATH environment variable in .bash_profile.
• make pytest fails saying, google protobuf missing. Fix by going to ~/local_pkgs/protobuf-2.6.1/python, then typing (Instructions in the README.txt file in this directory):
• python setup.py build
• python setup.py google_test
• python setup.py test --cpp_implementation
• python setup.py install --cpp_implementation
• make pytest -j works!